SELECT 
  cscart_products_categories.product_id, 
  GROUP_CONCAT(
    IF(
      cscart_products_categories.link_type = "M", 
      CONCAT(
        cscart_products_categories.category_id, 
        "M"
      ), 
      cscart_products_categories.category_id
    )
  ) AS category_ids, 
  product_position_source.position AS position 
FROM 
  cscart_products_categories 
  INNER JOIN cscart_categories ON cscart_categories.category_id = cscart_products_categories.category_id 
  AND cscart_categories.storefront_id IN (0, 1) 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
  LEFT JOIN cscart_products_categories AS product_position_source ON cscart_products_categories.product_id = product_position_source.product_id 
  AND product_position_source.category_id = 280 
WHERE 
  cscart_products_categories.product_id IN (
    12684, 12714, 13260, 13267, 12349, 12364, 
    12259, 12504, 12524, 12379, 6843, 6840, 
    6841, 6846, 13274, 13286, 13280, 13292, 
    6962, 6966, 6967, 6965, 6963, 6952, 
    6953, 3484, 3487, 3485, 3486, 6969, 
    3434, 6947, 3424, 3911, 3422, 3910, 
    3421, 3909, 3420, 3423, 3912, 3430, 
    3429, 3437, 3436, 3438, 6959, 3425, 
    6958, 6960, 6968, 6961, 6964, 6957, 
    6956, 6954, 6955, 6948, 3914, 3913, 
    6950, 6949, 3477, 3452, 3478, 3479, 
    3453, 3491, 3488, 3497, 3495, 3489, 
    3492, 3496, 3490, 3494, 6951, 3502, 
    3503, 3493, 3498, 3428, 3433, 3432, 
    12594, 12609, 12424, 12554, 12536, 
    12546, 13127, 12464, 12624, 12654, 
    13148, 13153
  ) 
GROUP BY 
  cscart_products_categories.product_id

Query time 0.00317

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "63.80"
    },
    "grouping_operation": {
      "using_temporary_table": true,
      "using_filesort": true,
      "cost_info": {
        "sort_cost": "3.72"
      },
      "nested_loop": [
        {
          "table": {
            "table_name": "cscart_categories",
            "access_type": "ALL",
            "possible_keys": [
              "PRIMARY",
              "c_status",
              "p_category_id"
            ],
            "rows_examined_per_scan": 46,
            "rows_produced_per_join": 1,
            "filtered": "4.00",
            "cost_info": {
              "read_cost": "5.15",
              "eval_cost": "0.18",
              "prefix_cost": "5.33",
              "data_read_per_join": "7K"
            },
            "used_columns": [
              "category_id",
              "storefront_id",
              "usergroup_ids",
              "status"
            ],
            "attached_condition": "((`test2_gaseus`.`cscart_categories`.`storefront_id` in (0,1)) and ((`test2_gaseus`.`cscart_categories`.`usergroup_ids` = '') or (0 <> find_in_set(0,`test2_gaseus`.`cscart_categories`.`usergroup_ids`)) or (0 <> find_in_set(1,`test2_gaseus`.`cscart_categories`.`usergroup_ids`))) and (`test2_gaseus`.`cscart_categories`.`status` in ('A','H')))"
          }
        },
        {
          "table": {
            "table_name": "cscart_products_categories",
            "access_type": "ref",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id"
            ],
            "key_length": "3",
            "ref": [
              "test2_gaseus.cscart_categories.category_id"
            ],
            "rows_examined_per_scan": 83,
            "rows_produced_per_join": 3,
            "filtered": "2.44",
            "index_condition": "(`test2_gaseus`.`cscart_products_categories`.`product_id` in (12684,12714,13260,13267,12349,12364,12259,12504,12524,12379,6843,6840,6841,6846,13274,13286,13280,13292,6962,6966,6967,6965,6963,6952,6953,3484,3487,3485,3486,6969,3434,6947,3424,3911,3422,3910,3421,3909,3420,3423,3912,3430,3429,3437,3436,3438,6959,3425,6958,6960,6968,6961,6964,6957,6956,6954,6955,6948,3914,3913,6950,6949,3477,3452,3478,3479,3453,3491,3488,3497,3495,3489,3492,3496,3490,3494,6951,3502,3503,3493,3498,3428,3433,3432,12594,12609,12424,12554,12536,12546,13127,12464,12624,12654,13148,13153))",
            "cost_info": {
              "read_cost": "38.18",
              "eval_cost": "0.37",
              "prefix_cost": "58.78",
              "data_read_per_join": "59"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "link_type"
            ]
          }
        },
        {
          "table": {
            "table_name": "product_position_source",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id",
              "product_id"
            ],
            "key_length": "6",
            "ref": [
              "const",
              "test2_gaseus.cscart_products_categories.product_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 3,
            "filtered": "100.00",
            "cost_info": {
              "read_cost": "0.93",
              "eval_cost": "0.37",
              "prefix_cost": "60.09",
              "data_read_per_join": "59"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "position"
            ]
          }
        }
      ]
    }
  }
}