SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    1697, 1698, 1699, 1700, 1701, 1702, 1703, 
    1704, 1705, 1706, 1707, 1708, 1709, 
    1710, 1711, 1712, 1713, 1714, 1715, 
    1716, 1717, 1718, 1719, 1720, 3733, 
    3735, 3736, 3737, 3738, 5371, 5372, 
    5373, 5374, 5375, 5376, 5377, 5378, 
    5379, 5380, 5381, 5382, 5383, 5384, 
    5385, 5386, 5387, 5388, 5389, 5390, 
    5391, 5392, 5393, 5394, 5395, 5396, 
    5397, 5398, 5399, 5400, 5401, 5402, 
    5403, 5404, 5405, 5406, 5407, 5408, 
    5409, 5410, 5411, 5412, 5413, 5414, 
    6728, 515, 3156, 3676, 5131, 13298, 
    13299, 13300, 13301, 13124, 13125, 
    13126, 13098, 13105, 13112, 13118, 
    13064, 13071, 13078, 13085, 13091, 
    3834, 3833
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00147

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "109.51"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 190,
        "rows_produced_per_join": 37,
        "filtered": "19.99",
        "index_condition": "(`test2_gaseus`.`cscart_product_prices`.`product_id` in (1697,1698,1699,1700,1701,1702,1703,1704,1705,1706,1707,1708,1709,1710,1711,1712,1713,1714,1715,1716,1717,1718,1719,1720,3733,3735,3736,3737,3738,5371,5372,5373,5374,5375,5376,5377,5378,5379,5380,5381,5382,5383,5384,5385,5386,5387,5388,5389,5390,5391,5392,5393,5394,5395,5396,5397,5398,5399,5400,5401,5402,5403,5404,5405,5406,5407,5408,5409,5410,5411,5412,5413,5414,6728,515,3156,3676,5131,13298,13299,13300,13301,13124,13125,13126,13098,13105,13112,13118,13064,13071,13078,13085,13091,3834,3833))",
        "cost_info": {
          "read_cost": "105.71",
          "eval_cost": "3.80",
          "prefix_cost": "109.51",
          "data_read_per_join": "911"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`test2_gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`test2_gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
515 0.00000000
1697 0.00000000
1698 0.00000000
1699 0.00000000
1700 0.00000000
1701 0.00000000
1702 0.00000000
1703 0.00000000
1704 0.00000000
1705 0.00000000
1706 0.00000000
1707 0.00000000
1708 0.00000000
1709 0.00000000
1710 0.00000000
1711 0.00000000
1712 0.00000000
1713 0.00000000
1714 0.00000000
1715 0.00000000
1716 0.00000000
1717 0.00000000
1718 0.00000000
1719 0.00000000
1720 0.00000000
3156 772.00000000
3676 0.00000000
3733 0.00000000
3735 0.00000000
3736 0.00000000
3737 0.00000000
3738 0.00000000
3833 0.00000000
3834 0.00000000
5131 0.00000000
5371 0.00000000
5372 0.00000000
5373 0.00000000
5374 0.00000000
5375 0.00000000
5376 0.00000000
5377 0.00000000
5378 0.00000000
5379 0.00000000
5380 0.00000000
5381 0.00000000
5382 0.00000000
5383 0.00000000
5384 0.00000000
5385 0.00000000
5386 0.00000000
5387 0.00000000
5388 0.00000000
5389 0.00000000
5390 0.00000000
5391 0.00000000
5392 0.00000000
5393 0.00000000
5394 0.00000000
5395 0.00000000
5396 0.00000000
5397 0.00000000
5398 0.00000000
5399 0.00000000
5400 0.00000000
5401 0.00000000
5402 0.00000000
5403 0.00000000
5404 0.00000000
5405 0.00000000
5406 0.00000000
5407 0.00000000
5408 0.00000000
5409 0.00000000
5410 0.00000000
5411 0.00000000
5412 0.00000000
5413 0.00000000
5414 0.00000000
6728 772.00000000
13064 1400.00000000
13071 1420.00000000
13078 1530.00000000
13085 2030.00000000
13091 1760.00000000
13098 2010.00000000
13105 2150.00000000
13112 2430.00000000
13118 2160.00000000
13124 2320.00000000
13125 2920.00000000
13126 6830.00000000
13298 535.00000000
13299 535.00000000
13300 455.00000000
13301 455.00000000