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SELECT 
  cscart_ult_product_prices.product_id, 
  MIN(
    IF(
      cscart_ult_product_prices.percentage_discount = 0, 
      cscart_ult_product_prices.price, 
      cscart_ult_product_prices.price - (
        cscart_ult_product_prices.price * cscart_ult_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_ult_product_prices 
WHERE 
  cscart_ult_product_prices.product_id IN (
    12916, 12921, 12956, 12958, 13014, 13028, 
    13040, 13052, 12960, 12974, 12988, 
    13000, 13148, 13153, 12928, 12926, 
    12942, 3135, 12850, 12869, 12876, 12896, 
    12900, 12909, 12752, 12802, 3403, 3404, 
    3405, 3406, 3408, 3409, 6930, 6931, 
    6932, 6933, 6934, 6935, 6936, 3407, 
    2666, 3845, 12796, 12797, 2667, 2668, 
    2669, 2670
  ) 
  AND cscart_ult_product_prices.lower_limit = 1 
  AND cscart_ult_product_prices.company_id = 1 
  AND cscart_ult_product_prices.usergroup_id IN (0, 0, 1) 
GROUP BY 
  cscart_ult_product_prices.product_id

Query time 0.00033

JSON explain

{
  "query_block": {
    "select_id": 1,
    "message": "no matching row in const table"
  }
}